Panwar J, Autour A, Merten CA (2023) Design and consruction of a microfluidics workstation for high-throughput multi-wavelength fluoresence and transmittance activated droplet analysis and sorting. Nat Protocols. doi: 10.1038/s41596-022-00796-2
Site titleNews and Updates
New in Nature Protocols
Preprint on high-throughput profiling of drug interactions in Gram-positives
Cacace E, Kim V, Knopp M, Tietgen M, Brauer-Nikonow A, Inecik K, Mateus A, Milanese A, Mårli MT, Mitosch K, Selkrig J, Brochado AR, Kuipers OP, Kjos M, Zeller G, Savitski MM, Göttig S, Huber W, Typas A (2022) High-throughput profiling of drug interactions in Gram-positive bacteria. biorxiv. doi: 10.1101/2022.12.23.521747
2FAST2Q - new publication
Bravo A, Typas A, Veening JW (2022) 2FAST2Q: a general-purpose sequence search and counting program for FASTQ files. PeerJ. 10:e14041. doi: 10.7717/peerj.14041
Review on staphylcoccal biofilms
Kranjec C, Morales Angeles D, Mårli MT, Fernandez L, Garcia P, Diep DB, Kjos M (2021) Staphylococcal biofilms: challenges and novel therapeutic perspectives. Antibiotics (Basel). 10(2): 131. doi: 10.3390/antibiotics10020131
CRISPRi-seq protocol published in Nature protocols
de Bakker V, Liu X, Bravo AM, Veening JW (2022) CRISPRi-seq for genome-wide fitness quantification in bacteria. Nat Protocols. 17(2):252-281. doi: 10.1038/s41596-021-00639-6
Progress meeting 1
Today we've had our first online progress meeting in the consortium with plenty of interesting results and discussions.
Last week we had a successful kick-off meeting for our project in Heidelberg! Interesting discussions, new ideas and already some promising results. Looking forward to the coming years!
The JPI-AMR project has now initiated as Vincent de Bakker started his PhD at the University of Lausanne. Good luck! The other positions associated with the project will be starting during the spring/summer 2019.